SARS_CoV2 EpiQuant Analysis Report
Section I: Outline of data analysis
1. Basic Information
- Name of analyst: Guangzh, Vansena, Ed, Samantha
- Date of analysis: 2022-01-13
- Data source: GISAID
2. Analytical Parameters
- Geographical area of interest
- Region/Countries/Provinces:
- Period of interest
- TP0: 2020-07-01
- TP1: 2020-11-15
- TP2: 2022-03-01
- Subsampling information
- Maximum cluster size= 10000
- Variants of interest
- VOCs/Prevalent lineages/Mutations of interest
Section II: Data analysis
1. Overview of cases
- Cases in (Europe) between (2020-07-01) and (2022-03-01); random sample (30000) out of (112900) genomes
a. Cases (see Figure 1.1.A)
b. Lineages (see Figure 1.1.B)
2. Epidemiological cluster cohesion (ECC) analysis
- ECC histogram and contour plots
a. Geospatial and temporal ECC histogram (TP1 and TP2) (see Figure 2.1.A)
b. Geospatial and temporal ECC 3D surface density (see Figure 2.1.B) - ECC Change vector directionality analysis
a. Bubble plots with directionality vectors (see Figure 2.2.A)
b. Summary of directionality vectors by TP1 cluster size (see Figure 2.2.B)
c. Summary of directionality vectors by Cluster growth rate (see Figure 2.2.C)
d. Summary of directionality vectors by ECC and Delta ECC level (see Figure 2.2.D) - Cluster Growth and Centroids
a. Top 20 growth clusters (by size) (see Figure 2.3.A)
b. Top 20 growth clusters (by growth rate) (see Figure 2.3.B)
c. Average geographic and temporal pairwise distance for top 20 clusters (by size) (see Figure 2.3.C)
d. Average geographic and temporal pairwise distance for top 20 clusters (by growth rate) (see Figure 2.3.D) - Monthly ECC trend analysis
a. Monthly Geo and Temp ECC (average) (see Figure 2.4.A)
b. Top 10 clusters (by size) Geo ECC, Geo-Temp ECC,Temp ECC (see Figure 2.4.B)
c. Top 10 clusters (by growth rate) Geo ECC,Geo-Temp ECC,Temp ECC (see Figure 2.4.C) - Weekly ECC trend analysis
a. Weekly Geo and Temp ECC (average) (see Figure 2.5.A)
b. Top 10 clusters (by size) Geo ECC, Geo-Temp ECC, Geo ECC,Temp ECC (see Figure 2.5.B)
c. Top 10 clusters (by growth rate) Geo ECC, Geo-Temp ECC,Temp ECC (see Figure 2.5.C)
3. Geospatial and temporal heterogeneity within top clusters
- Heatmaps and frequency histograms for Top 5 clusters (by size)
a. GEO + 50-50 + TEMP heatmaps for top 5 cluster (see Figure 3.1.A)
b. GEO + 50-50 + TEMP heatmaps for top 4 cluster (see Figure 3.1.B)
c. GEO + 50-50 + TEMP heatmaps for top 3 cluster (see Figure 3.1.C)
d. GEO + 50-50 + TEMP heatmaps for top 2 cluster (see Figure 3.1.D)
e. GEO + 50-50 + TEMP heatmaps for top 1 cluster (see Figure 3.1.E)
f. GEO + 50-50 + TEMP frequency histograms for top 5 cluster (see Figure 3.1.F)
g. GEO + 50-50 + TEMP frequency histograms for top 4 cluster (see Figure 3.1.G)
h. GEO + 50-50 + TEMP frequency histograms for top 3 cluster (see Figure 3.1.H)
i. GEO + 50-50 + TEMP frequency histograms for top 2 cluster (see Figure 3.1.I)
j. GEO + 50-50 + TEMP frequency histograms for top 1 cluster (see Figure 3.1.J) - Heatmaps and frequency histogram for Top 5 clusters (by growth rate)
a. GEO + 50-50 + TEMP heatmaps for top 5 cluster (see Figure 3.2.A)
b. GEO + 50-50 + TEMP heatmaps for top 4 cluster (see Figure 3.2.B)
c. GEO + 50-50 + TEMP heatmaps for top 3 cluster (see Figure 3.2.C)
d. GEO + 50-50 + TEMP heatmaps for top 2 cluster ( see Figure 3.2.D)
e. GEO + 50-50 + TEMP heatmaps for top 1 cluster (see Figure 3.2.E)
f. GEO + 50-50 + TEMP frequency histograms for top 5 cluster (see Figure 3.2.F)
g. GEO + 50-50 + TEMP frequency histograms for top 4 cluster (see Figure 3.2.G)
h. GEO + 50-50 + TEMP frequency histograms for top 3 cluster (see Figure 3.2.H)
i. GEO + 50-50 + TEMP frequency histograms for top 2 cluster (see Figure 3.2.I)
j. GEO + 50-50 + TEMP frequency histograms for top 1 cluster (see Figure 3.2.J) - Pairwise distance for Top 20 clusters (by size)
a. Pairwise geospatial distance for top20 clusters (by size) (see Figure 3.3.A)
b. Pairwise temporal distance for top20 clusters (by size) (see Figure 3.3.B)
4. Data summary tables
- Summary of SARS-Cov2 genomes by geography and time
a. by country and TP/month by time (week, month, TP) (see Table 4.1.a)
b. by country and week (see Table 4.1.b) - Summary of SARS-Cov2 genomes by PANGO lineages
a. by PANGO lineages and country (see Table 4.2.a)
b. by PANGO lineages and Timepoint/Month (see Table 4.2.b)
c. by PANGO lineages and week(see Table 4.2.c)
d. Summary table for change vector directionality (see Table 4.2.d)
5. Supplementary figures
- Genome counts over time
a. By Country
i. TP1 vs TP2 genome counts (see Figure 5.1.A.I)
ii. Cumulative genome counts by month, faceted by country (see Figure 5.1.A.II)
iii. Genome counts, faceted by month (see Figure 5.1.A.III)
iv. Cumulative genome counts by week, faceted by country (see Figure 5.1.A.IV)
v. Genome counts, faceted by week (see Figure 5.1.A.V)
b. By Province
i. TP1 vs TP2 genome counts (see Figure 5.1.B.I)
ii. Cumulative genome counts by month, faceted by province (see Figure 5.1.B.II)
iii. Genome counts, faceted by month (see Figure 5.1.B.III)
iv. Cumulative genome counts by week, faceted by province (see Figure 5.1.B.IV)
v. Genome counts, faceted by week (see Figure 5.1.B.V) - Lineage prevalence over time
a. By Month
i. Cumulative genome counts for most prevalent lineages, by country (see Figure 5.2.A.I)
b.By Week
ii. Cumulative genome counts for most prevalent lineages, by country (see Figure 5.2.B.I) - Lineage spread by geographical area
a. By Country
i. TP1 vs TP2 of countries detected (see Figure 5.3.A.I)
ii. Countries detected: most prevalent lineages, by month (see Figure 5.3.A.II)
iii. Countries detected: most prevalent lineages, by week (see Figure 5.3.A.III)
b. By Province
i. TP1 vs TP2 of Provinces detected:(see Figure 5.3.B.I)
ii. Provinces detected: most prevalent lineages, by month (see Figure 5.3.B.II)
iii. Provinces detected: most prevalent lineages, by week (see Figure 5.3.B.III) - ECC direction classes vs compass rose (see Figure 5.4)
1. Overview of cases
1.1. Cases and lineages
Figure 1.1.A. Accumulated cases in countries
Figure 1.1.B. Predominant lineages by genome count (top20)
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2. Epidemiological cluster cohesion (ECC) analysis
2.1. ECC histogram and contour plots
Figure 2.1.A. Geospatial and temporal ECC distribution (histogram)
Figure 2.1.B. Geospatial and temporal ECC 3D surface density at TP1 and TP2
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2.2. ECC Change vector directionality analysis
Figure 2.2.A. Bubble plots with directionality vectors
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Figure 2.2.B. Summary of directionality vectors by TP1 cluster size
Figure 2.2.C. Summary of directionality vectors by cluster growth rate
Figure 2.2.D. Summary of directionality vectors by ECC and Delta ECC level
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2.3. Cluster Growth and Centroids
Figure 2.3.A. Top 20 growth clusters (by size)
Figure 2.3.B. Average geographic and temporal pairwise distance for top 20 clusters (by size)
Figure 2.3.C. Top 20 growth clusters (by growth rate)
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2.4. Monthly ECC trend analysis
Figure 2.4.A. Monthly Geo and Temp ECC (average)
Figure 2.4.B. Top 10 clusters (by size) Geo ECC, Geo-Temp ECC,Temp ECC
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Figure 2.4.C. Top 10 clusters (by growth rate) Geo ECC,Geo-Temp ECC,Temp ECC
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2.5. Week ly ECC trend analysis
Figure 2.5.A. Weekly Geo and Temp ECC (average)
Figure 2.5.B. Top 10 clusters (by size) Geo ECC, Geo-Temp ECC,Temp ECC
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Figure 2.5.C. Top 10 clusters (by growth rate) Geo ECC,Geo-Temp ECC,Temp ECC
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3. Geospatial and temporal heterogeneity within top clusters
3.1. Heatmaps and pair-wise distance frequency histogram for top 5 clusters (by size)
Figure 3.1.A. GEO + 50-50 + TEMP heatmaps for top 5 cluster
Figure 3.1.B. GEO + 50-50 + TEMP heatmaps for top 4 cluster
Figure 3.1.C. GEO + 50-50 + TEMP heatmaps for top 3 cluster
Figure 3.1.D. GEO + 50-50 + TEMP heatmaps for top 2 cluster
Figure 3.1.E. GEO + 50-50 + TEMP heatmaps for top 1 cluster
Figure 3.1.F. GEO + 50-50 + TEMP frequency for top 5 cluster
Figure 3.1.G. GEO + 50-50 + TEMP frequency for top 4 cluster
Figure 3.1.H. GEO + 50-50 + TEMP frequency for top 3 cluster
Figure 3.1.I. GEO + 50-50 + TEMP frequency for top 2 cluster
Figure 3.1.J. GEO + 50-50 + TEMP frequency for top 1 cluster
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3.2. Heatmaps and pair-wise distance frequency histogram for top 5 clusters (by growth rate)
3.3. Pairwise distance for Top 20 clusters (by size (by growth rate)
Figure 3.3.A. Pairwise geospatial distance for top20 clusters (by size)
Figure 3.3.B. Pairwise temporal distance for top20 clusters (by size)
4. Data summary tables
4.1. Summary of SARS-Cov2 genomes by geography and time
Table 4.1.a. SARS-Cov2 genomes by country and TP/months
| Country | TP1 | TP2 | 2020-07 | 2020-08 | 2020-09 | 2020-10 | 2020-11 | 2020-12 | 2021-01 | 2021-02 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| United Kingdom | 3798 (45.8%) | 9897 (32.0%) | 66 (16.1%) | 474 (47.1%) | 977 (51.0%) | 1625 (48.1%) | 1237 (42.2%) | 1919 (41.7%) | 1778 (22.4%) | 1821 (20.9%) | 9897 (32.0%) |
| Switzerland | 899 (10.8%) | 3904 (12.6%) | 77 (18.8%) | 119 (11.8%) | 94 (4.9%) | 320 (9.5%) | 469 (16.0%) | 667 (14.5%) | 1506 (19.0%) | 652 (7.5%) | 3904 (12.6%) |
| Germany | 204 (2.5%) | 2933 (9.5%) | 7 (1.7%) | 43 (4.3%) | 44 (2.3%) | 68 (2.0%) | 68 (2.3%) | 141 (3.1%) | 705 (8.9%) | 1857 (21.3%) | 2933 (9.5%) |
| Netherlands | 452 (5.5%) | 2413 (7.8%) | 41 (10.0%) | 68 (6.8%) | 103 (5.4%) | 159 (4.7%) | 196 (6.7%) | 487 (10.6%) | 736 (9.3%) | 623 (7.1%) | 2413 (7.8%) |
| Spain | 504 (6.1%) | 1845 (6.0%) | 45 (11.0%) | 81 (8.0%) | 175 (9.1%) | 171 (5.1%) | 82 (2.8%) | 263 (5.7%) | 626 (7.9%) | 402 (4.6%) | 1845 (6.0%) |
| Italy | 208 (2.5%) | 2008 (6.5%) | 9 (2.2%) | 30 (3.0%) | 41 (2.1%) | 92 (2.7%) | 92 (3.1%) | 260 (5.7%) | 587 (7.4%) | 897 (10.3%) | 2008 (6.5%) |
| Iceland | 771 (9.3%) | 920 (3.0%) | 16 (3.9%) | 42 (4.2%) | 170 (8.9%) | 472 (14.0%) | 122 (4.2%) | 86 (1.9%) | 12 (0.2%) | 0 (0.0%) | 920 (3.0%) |
| Sweden | 91 (1.1%) | 1456 (4.7%) | 11 (2.7%) | 22 (2.2%) | 24 (1.3%) | 24 (0.7%) | 22 (0.8%) | 83 (1.8%) | 574 (7.2%) | 696 (8.0%) | 1456 (4.7%) |
| Ireland | 175 (2.1%) | 1006 (3.3%) | 18 (4.4%) | 35 (3.5%) | 56 (2.9%) | 48 (1.4%) | 46 (1.6%) | 73 (1.6%) | 228 (2.9%) | 502 (5.8%) | 1006 (3.3%) |
| Luxembourg | 320 (3.9%) | 751 (2.4%) | 14 (3.4%) | 4 (0.4%) | 10 (0.5%) | 183 (5.4%) | 248 (8.5%) | 234 (5.1%) | 58 (0.7%) | 0 (0.0%) | 751 (2.4%) |
| Portugal | 108 (1.3%) | 632 (2.0%) | 13 (3.2%) | 12 (1.2%) | 0 (0.0%) | 0 (0.0%) | 102 (3.5%) | 69 (1.5%) | 228 (2.9%) | 208 (2.4%) | 632 (2.0%) |
| Norway | 198 (2.4%) | 538 (1.7%) | 25 (6.1%) | 31 (3.1%) | 47 (2.5%) | 66 (2.0%) | 46 (1.6%) | 59 (1.3%) | 120 (1.5%) | 144 (1.6%) | 538 (1.7%) |
| Russia | 237 (2.9%) | 334 (1.1%) | 32 (7.8%) | 19 (1.9%) | 109 (5.7%) | 42 (1.2%) | 66 (2.3%) | 60 (1.3%) | 6 (0.1%) | 0 (0.0%) | 334 (1.1%) |
| Turkey | 3 (0.0%) | 484 (1.6%) | 1 (0.2%) | 2 (0.2%) | 0 (0.0%) | 0 (0.0%) | 8 (0.3%) | 13 (0.3%) | 122 (1.5%) | 338 (3.9%) | 484 (1.6%) |
| Slovenia | 17 (0.2%) | 466 (1.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 15 (0.4%) | 2 (0.1%) | 13 (0.3%) | 160 (2.0%) | 276 (3.2%) | 466 (1.5%) |
| Poland | 27 (0.3%) | 270 (0.9%) | 0 (0.0%) | 0 (0.0%) | 4 (0.2%) | 0 (0.0%) | 26 (0.9%) | 23 (0.5%) | 86 (1.1%) | 131 (1.5%) | 270 (0.9%) |
| Lithuania | 20 (0.2%) | 241 (0.8%) | 1 (0.2%) | 5 (0.5%) | 8 (0.4%) | 0 (0.0%) | 14 (0.5%) | 101 (2.2%) | 107 (1.3%) | 5 (0.1%) | 241 (0.8%) |
| Denmark | 103 (1.2%) | 108 (0.3%) | 0 (0.0%) | 2 (0.2%) | 15 (0.8%) | 44 (1.3%) | 47 (1.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 108 (0.3%) |
| Latvia | 33 (0.4%) | 178 (0.6%) | 9 (2.2%) | 8 (0.8%) | 12 (0.6%) | 4 (0.1%) | 0 (0.0%) | 0 (0.0%) | 38 (0.5%) | 107 (1.2%) | 178 (0.6%) |
| France | 2 (0.0%) | 165 (0.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 1 (0.0%) | 0 (0.0%) | 162 (2.0%) | 1 (0.0%) | 165 (0.5%) |
| Hungary | 48 (0.6%) | 59 (0.2%) | 0 (0.0%) | 3 (0.3%) | 14 (0.7%) | 31 (0.9%) | 0 (0.0%) | 0 (0.0%) | 9 (0.1%) | 2 (0.0%) | 59 (0.2%) |
| North Macedonia | 19 (0.2%) | 80 (0.3%) | 2 (0.5%) | 3 (0.3%) | 2 (0.1%) | 5 (0.1%) | 7 (0.2%) | 5 (0.1%) | 36 (0.5%) | 20 (0.2%) | 80 (0.3%) |
| Slovakia | 10 (0.1%) | 59 (0.2%) | 0 (0.0%) | 0 (0.0%) | 4 (0.2%) | 0 (0.0%) | 11 (0.4%) | 25 (0.5%) | 14 (0.2%) | 5 (0.1%) | 59 (0.2%) |
| Serbia | 30 (0.4%) | 34 (0.1%) | 19 (4.6%) | 3 (0.3%) | 2 (0.1%) | 5 (0.1%) | 2 (0.1%) | 3 (0.1%) | 0 (0.0%) | 0 (0.0%) | 34 (0.1%) |
| Austria | 7 (0.1%) | 55 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (0.1%) | 4 (0.1%) | 12 (0.3%) | 13 (0.2%) | 21 (0.2%) | 55 (0.2%) |
| Romania | 4 (0.0%) | 49 (0.2%) | 2 (0.5%) | 1 (0.1%) | 0 (0.0%) | 1 (0.0%) | 12 (0.4%) | 2 (0.0%) | 13 (0.2%) | 18 (0.2%) | 49 (0.2%) |
| Ukraine | 0 (0.0%) | 11 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 11 (0.1%) | 0 (0.0%) | 11 (0.0%) |
| Montenegro | 2 (0.0%) | 8 (0.0%) | 2 (0.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 6 (0.1%) | 0 (0.0%) | 8 (0.0%) |
| Malta | 3 (0.0%) | 3 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.0%) |
| Belgium | 0 (0.0%) | 5 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 3 (0.0%) | 1 (0.0%) | 5 (0.0%) |
| Kosovo | 0 (0.0%) | 5 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.0%) | 3 (0.0%) | 0 (0.0%) | 5 (0.0%) |
| Liechtenstein | 0 (0.0%) | 2 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 1 (0.0%) | 2 (0.0%) |
| Monaco | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 1 (0.0%) |
| Total | 8293 (100.0%) | 30920 (100.0%) | 410 (100.0%) | 1007 (100.0%) | 1914 (100.0%) | 3381 (100.0%) | 2931 (100.0%) | 4601 (100.0%) | 7947 (100.0%) | 8729 (100.0%) | 30920 (100.0%) |
Table 4.1.b. SARS-Cov2 genomes by country and week
| Country/week | 2020-27 | 2020-28 | 2020-29 | 2020-30 | 2020-31 | 2020-32 | 2020-33 | 2020-34 | 2020-35 | 2020-36 | 2020-37 | 2020-38 | 2020-39 | 2020-40 | 2020-41 | 2020-42 | 2020-43 | 2020-44 | 2020-45 | 2020-46 | 2020-47 | 2020-48 | 2020-49 | 2020-50 | 2020-51 | 2020-52 | 2020-53 | 2021-01 | 2021-02 | 2021-03 | 2021-04 | 2021-05 | 2021-06 | 2021-07 | 2021-08 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| United Kingdom | 6 (10.7%) | 7 (6.9%) | 21 (24.4%) | 20 (23.3%) | 23 (19.2%) | 71 (38.0%) | 117 (51.5%) | 159 (57.2%) | 94 (40.2%) | 110 (39.0%) | 166 (46.8%) | 258 (52.5%) | 380 (61.2%) | 317 (54.7%) | 356 (47.9%) | 267 (39.4%) | 397 (50.1%) | 452 (47.7%) | 314 (41.0%) | 281 (38.2%) | 241 (44.5%) | 265 (43.7%) | 322 (43.4%) | 484 (52.8%) | 625 (49.9%) | 357 (33.7%) | 296 (16.9%) | 378 (27.9%) | 400 (23.4%) | 335 (20.1%) | 557 (25.1%) | 338 (13.5%) | 513 (20.3%) | 534 (25.8%) | 436 (26.9%) | 9897 (32.0%) |
| Switzerland | 12 (21.4%) | 19 (18.8%) | 19 (22.1%) | 13 (15.1%) | 15 (12.5%) | 19 (10.2%) | 24 (10.6%) | 33 (11.9%) | 38 (16.2%) | 24 (8.5%) | 41 (11.5%) | 3 (0.6%) | 4 (0.6%) | 44 (7.6%) | 52 (7.0%) | 103 (15.2%) | 73 (9.2%) | 86 (9.1%) | 186 (24.3%) | 114 (15.5%) | 73 (13.5%) | 69 (11.4%) | 74 (10.0%) | 98 (10.7%) | 139 (11.1%) | 177 (16.7%) | 303 (17.3%) | 385 (28.4%) | 341 (19.9%) | 385 (23.1%) | 286 (12.9%) | 270 (10.7%) | 162 (6.4%) | 163 (7.9%) | 57 (3.5%) | 3904 (12.6%) |
| Germany | 3 (5.4%) | 1 (1.0%) | 1 (1.2%) | 2 (2.3%) | 1 (0.8%) | 1 (0.5%) | 15 (6.6%) | 15 (5.4%) | 10 (4.3%) | 6 (2.1%) | 5 (1.4%) | 11 (2.2%) | 15 (2.4%) | 16 (2.8%) | 16 (2.2%) | 19 (2.8%) | 16 (2.0%) | 21 (2.2%) | 15 (2.0%) | 16 (2.2%) | 7 (1.3%) | 14 (2.3%) | 37 (5.0%) | 26 (2.8%) | 36 (2.9%) | 32 (3.0%) | 27 (1.5%) | 23 (1.7%) | 107 (6.3%) | 215 (12.9%) | 347 (15.6%) | 420 (16.7%) | 415 (16.4%) | 470 (22.7%) | 552 (34.0%) | 2933 (9.5%) |
| Netherlands | 14 (25.0%) | 14 (13.9%) | 2 (2.3%) | 6 (7.0%) | 17 (14.2%) | 6 (3.2%) | 15 (6.6%) | 7 (2.5%) | 25 (10.7%) | 26 (9.2%) | 7 (2.0%) | 30 (6.1%) | 35 (5.6%) | 19 (3.3%) | 41 (5.5%) | 35 (5.2%) | 39 (4.9%) | 37 (3.9%) | 33 (4.3%) | 51 (6.9%) | 31 (5.7%) | 66 (10.9%) | 60 (8.1%) | 91 (9.9%) | 108 (8.6%) | 112 (10.6%) | 151 (8.6%) | 168 (12.4%) | 171 (10.0%) | 157 (9.4%) | 216 (9.7%) | 260 (10.3%) | 222 (8.8%) | 109 (5.3%) | 32 (2.0%) | 2413 (7.8%) |
| Italy | 1 (1.8%) | 4 (4.0%) | 1 (1.2%) | 3 (3.5%) | 0 (0.0%) | 3 (1.6%) | 1 (0.4%) | 12 (4.3%) | 13 (5.6%) | 10 (3.5%) | 12 (3.4%) | 14 (2.9%) | 2 (0.3%) | 8 (1.4%) | 8 (1.1%) | 11 (1.6%) | 10 (1.3%) | 60 (6.3%) | 23 (3.0%) | 13 (1.8%) | 21 (3.9%) | 34 (5.6%) | 11 (1.5%) | 40 (4.4%) | 82 (6.5%) | 78 (7.4%) | 547 (31.3%) | 27 (2.0%) | 23 (1.3%) | 32 (1.9%) | 7 (0.3%) | 120 (4.8%) | 167 (6.6%) | 314 (15.2%) | 296 (18.2%) | 2008 (6.5%) |
| Spain | 7 (12.5%) | 10 (9.9%) | 14 (16.3%) | 4 (4.7%) | 14 (11.7%) | 24 (12.8%) | 13 (5.7%) | 22 (7.9%) | 15 (6.4%) | 27 (9.6%) | 50 (14.1%) | 52 (10.6%) | 32 (5.2%) | 35 (6.0%) | 37 (5.0%) | 50 (7.4%) | 38 (4.8%) | 28 (3.0%) | 14 (1.8%) | 20 (2.7%) | 28 (5.2%) | 19 (3.1%) | 23 (3.1%) | 47 (5.1%) | 62 (4.9%) | 67 (6.3%) | 80 (4.6%) | 111 (8.2%) | 190 (11.1%) | 157 (9.4%) | 153 (6.9%) | 154 (6.1%) | 79 (3.1%) | 110 (5.3%) | 59 (3.6%) | 1845 (6.0%) |
| Sweden | 2 (3.6%) | 4 (4.0%) | 4 (4.7%) | 0 (0.0%) | 1 (0.8%) | 11 (5.9%) | 4 (1.8%) | 1 (0.4%) | 6 (2.6%) | 4 (1.4%) | 6 (1.7%) | 7 (1.4%) | 7 (1.1%) | 2 (0.3%) | 9 (1.2%) | 3 (0.4%) | 3 (0.4%) | 8 (0.8%) | 8 (1.0%) | 1 (0.1%) | 3 (0.6%) | 9 (1.5%) | 5 (0.7%) | 3 (0.3%) | 23 (1.8%) | 24 (2.3%) | 38 (2.2%) | 41 (3.0%) | 102 (6.0%) | 119 (7.1%) | 302 (13.6%) | 369 (14.7%) | 241 (9.5%) | 49 (2.4%) | 37 (2.3%) | 1456 (4.7%) |
| Ireland | 2 (3.6%) | 7 (6.9%) | 0 (0.0%) | 6 (7.0%) | 8 (6.7%) | 8 (4.3%) | 15 (6.6%) | 7 (2.5%) | 0 (0.0%) | 10 (3.5%) | 15 (4.2%) | 27 (5.5%) | 1 (0.2%) | 4 (0.7%) | 19 (2.6%) | 15 (2.2%) | 6 (0.8%) | 7 (0.7%) | 9 (1.2%) | 10 (1.4%) | 6 (1.1%) | 21 (3.5%) | 6 (0.8%) | 5 (0.5%) | 21 (1.7%) | 20 (1.9%) | 26 (1.5%) | 25 (1.8%) | 53 (3.1%) | 71 (4.3%) | 74 (3.3%) | 159 (6.3%) | 194 (7.7%) | 137 (6.6%) | 12 (0.7%) | 1006 (3.3%) |
| Iceland | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 6 (7.0%) | 11 (9.2%) | 10 (5.3%) | 9 (4.0%) | 13 (4.7%) | 8 (3.4%) | 9 (3.2%) | 6 (1.7%) | 54 (11.0%) | 75 (12.1%) | 70 (12.1%) | 162 (21.8%) | 121 (17.8%) | 68 (8.6%) | 83 (8.8%) | 45 (5.9%) | 23 (3.1%) | 20 (3.7%) | 23 (3.8%) | 28 (3.8%) | 18 (2.0%) | 22 (1.8%) | 18 (1.7%) | 12 (0.7%) | 6 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 920 (3.0%) |
| Luxembourg | 2 (3.6%) | 3 (3.0%) | 3 (3.5%) | 4 (4.7%) | 2 (1.7%) | 2 (1.1%) | 2 (0.9%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.3%) | 3 (0.6%) | 5 (0.8%) | 1 (0.2%) | 7 (0.9%) | 7 (1.0%) | 92 (11.6%) | 88 (9.3%) | 43 (5.6%) | 65 (8.8%) | 59 (10.9%) | 52 (8.6%) | 86 (11.6%) | 58 (6.3%) | 53 (4.2%) | 32 (3.0%) | 33 (1.9%) | 26 (1.9%) | 14 (0.8%) | 8 (0.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 751 (2.4%) |
| Portugal | 5 (8.9%) | 8 (7.9%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.7%) | 9 (3.8%) | 1 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 8 (1.0%) | 80 (10.9%) | 10 (1.8%) | 4 (0.7%) | 1 (0.1%) | 2 (0.2%) | 6 (0.5%) | 54 (5.1%) | 10 (0.6%) | 48 (3.5%) | 150 (8.8%) | 9 (0.5%) | 17 (0.8%) | 7 (0.3%) | 197 (7.8%) | 3 (0.1%) | 1 (0.1%) | 632 (2.0%) |
| Norway | 0 (0.0%) | 3 (3.0%) | 2 (2.3%) | 3 (3.5%) | 20 (16.7%) | 19 (10.2%) | 5 (2.2%) | 0 (0.0%) | 3 (1.3%) | 11 (3.9%) | 10 (2.8%) | 2 (0.4%) | 15 (2.4%) | 17 (2.9%) | 7 (0.9%) | 12 (1.8%) | 16 (2.0%) | 24 (2.5%) | 16 (2.1%) | 13 (1.8%) | 10 (1.8%) | 4 (0.7%) | 12 (1.6%) | 12 (1.3%) | 16 (1.3%) | 14 (1.3%) | 10 (0.6%) | 25 (1.8%) | 19 (1.1%) | 35 (2.1%) | 39 (1.8%) | 63 (2.5%) | 33 (1.3%) | 32 (1.5%) | 16 (1.0%) | 538 (1.7%) |
| Turkey | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.8%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.9%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 8 (1.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.2%) | 6 (0.6%) | 4 (0.2%) | 6 (0.4%) | 7 (0.4%) | 44 (2.6%) | 65 (2.9%) | 0 (0.0%) | 194 (7.7%) | 75 (3.6%) | 69 (4.3%) | 484 (1.6%) |
| Slovenia | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.3%) | 3 (0.4%) | 5 (0.6%) | 6 (0.6%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 2 (0.3%) | 0 (0.0%) | 7 (0.6%) | 0 (0.0%) | 159 (9.1%) | 2 (0.1%) | 2 (0.1%) | 1 (0.1%) | 0 (0.0%) | 254 (10.1%) | 15 (0.6%) | 4 (0.2%) | 3 (0.2%) | 466 (1.5%) |
| Russia | 2 (3.6%) | 9 (8.9%) | 11 (12.8%) | 6 (7.0%) | 4 (3.3%) | 5 (2.7%) | 5 (2.2%) | 4 (1.4%) | 4 (1.7%) | 20 (7.1%) | 20 (5.6%) | 20 (4.1%) | 35 (5.6%) | 21 (3.6%) | 16 (2.2%) | 17 (2.5%) | 0 (0.0%) | 3 (0.3%) | 14 (1.8%) | 22 (3.0%) | 13 (2.4%) | 9 (1.5%) | 21 (2.8%) | 4 (0.4%) | 20 (1.6%) | 17 (1.6%) | 10 (0.6%) | 2 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 334 (1.1%) |
| Poland | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.7%) | 1 (0.3%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 22 (2.3%) | 1 (0.1%) | 0 (0.0%) | 3 (0.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.2%) | 21 (2.0%) | 0 (0.0%) | 6 (0.4%) | 17 (1.0%) | 17 (1.0%) | 46 (2.1%) | 36 (1.4%) | 49 (1.9%) | 22 (1.1%) | 24 (1.5%) | 270 (0.9%) |
| Lithuania | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (1.2%) | 0 (0.0%) | 2 (1.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 4 (1.4%) | 6 (1.7%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 4 (0.4%) | 0 (0.0%) | 2 (0.3%) | 2 (0.4%) | 5 (0.8%) | 48 (6.5%) | 23 (2.5%) | 23 (1.8%) | 3 (0.3%) | 27 (1.5%) | 37 (2.7%) | 30 (1.8%) | 18 (1.1%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 4 (0.2%) | 0 (0.0%) | 241 (0.8%) |
| Latvia | 0 (0.0%) | 5 (5.0%) | 0 (0.0%) | 4 (4.7%) | 0 (0.0%) | 3 (1.6%) | 1 (0.4%) | 0 (0.0%) | 4 (1.7%) | 1 (0.4%) | 3 (0.8%) | 2 (0.4%) | 5 (0.8%) | 2 (0.3%) | 2 (0.3%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 1 (0.1%) | 15 (0.9%) | 20 (0.9%) | 35 (1.4%) | 29 (1.1%) | 30 (1.5%) | 13 (0.8%) | 178 (0.6%) |
| France | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 4 (0.2%) | 13 (1.0%) | 46 (2.7%) | 27 (1.6%) | 72 (3.2%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 165 (0.5%) |
| Denmark | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 0 (0.0%) | 1 (0.4%) | 1 (0.4%) | 1 (0.3%) | 5 (1.0%) | 7 (1.1%) | 4 (0.7%) | 1 (0.1%) | 11 (1.6%) | 23 (2.9%) | 6 (0.6%) | 29 (3.8%) | 14 (1.9%) | 4 (0.7%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 108 (0.3%) |
| North Macedonia | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (1.2%) | 1 (0.8%) | 2 (1.1%) | 0 (0.0%) | 1 (0.4%) | 0 (0.0%) | 0 (0.0%) | 2 (0.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.3%) | 1 (0.1%) | 1 (0.1%) | 1 (0.1%) | 5 (0.7%) | 2 (0.3%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 1 (0.1%) | 1 (0.1%) | 2 (0.2%) | 2 (0.1%) | 7 (0.5%) | 13 (0.8%) | 9 (0.5%) | 5 (0.2%) | 8 (0.3%) | 9 (0.4%) | 2 (0.1%) | 1 (0.1%) | 80 (0.3%) |
| Hungary | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.9%) | 15 (5.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 16 (2.8%) | 5 (0.7%) | 0 (0.0%) | 1 (0.1%) | 9 (1.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 3 (0.2%) | 3 (0.2%) | 1 (0.0%) | 2 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 59 (0.2%) |
| Slovakia | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.3%) | 3 (0.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 6 (0.8%) | 1 (0.2%) | 1 (0.2%) | 3 (0.4%) | 0 (0.0%) | 0 (0.0%) | 23 (2.2%) | 2 (0.1%) | 2 (0.1%) | 4 (0.2%) | 5 (0.3%) | 3 (0.1%) | 5 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 59 (0.2%) |
| Austria | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 1 (0.1%) | 3 (0.4%) | 0 (0.0%) | 2 (0.3%) | 2 (0.3%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 3 (0.3%) | 4 (0.3%) | 2 (0.2%) | 4 (0.2%) | 3 (0.2%) | 1 (0.1%) | 2 (0.1%) | 5 (0.2%) | 7 (0.3%) | 5 (0.2%) | 6 (0.3%) | 3 (0.2%) | 55 (0.2%) |
| Romania | 0 (0.0%) | 0 (0.0%) | 1 (1.2%) | 1 (1.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 2 (0.4%) | 10 (1.6%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 0 (0.0%) | 7 (0.4%) | 2 (0.1%) | 3 (0.1%) | 4 (0.2%) | 0 (0.0%) | 3 (0.1%) | 11 (0.7%) | 49 (0.2%) |
| Serbia | 0 (0.0%) | 7 (6.9%) | 5 (5.8%) | 6 (7.0%) | 2 (1.7%) | 1 (0.5%) | 0 (0.0%) | 1 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 3 (0.5%) | 1 (0.1%) | 1 (0.1%) | 1 (0.1%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 2 (0.2%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 34 (0.1%) |
| Ukraine | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (0.4%) | 6 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 11 (0.0%) |
| Montenegro | 0 (0.0%) | 0 (0.0%) | 2 (2.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 4 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 8 (0.0%) |
| Belgium | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (0.0%) |
| Kosovo | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 3 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (0.0%) |
| Malta | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 2 (0.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.0%) |
| Liechtenstein | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.0%) |
| Monaco | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 1 (0.0%) |
| Total | 56 (100.0%) | 101 (100.0%) | 86 (100.0%) | 86 (100.0%) | 120 (100.0%) | 187 (100.0%) | 227 (100.0%) | 278 (100.0%) | 234 (100.0%) | 282 (100.0%) | 355 (100.0%) | 491 (100.0%) | 621 (100.0%) | 580 (100.0%) | 743 (100.0%) | 678 (100.0%) | 793 (100.0%) | 947 (100.0%) | 766 (100.0%) | 736 (100.0%) | 542 (100.0%) | 607 (100.0%) | 742 (100.0%) | 917 (100.0%) | 1253 (100.0%) | 1060 (100.0%) | 1750 (100.0%) | 1355 (100.0%) | 1710 (100.0%) | 1670 (100.0%) | 2218 (100.0%) | 2513 (100.0%) | 2526 (100.0%) | 2067 (100.0%) | 1623 (100.0%) | 30920 (100.0%) |
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4.2. Summary of SARS-Cov2 genomes by PANGO lineages
Table 4.2.a. SARS-Cov2 genomes by PANGO lineages and country
| PANGO_lineage/Country | Austria | Belgium | Denmark | France | Germany | Hungary | Iceland | Ireland | Italy | Kosovo | Latvia | Liechtenstein | Lithuania | Luxembourg | Malta | Monaco | Montenegro | Netherlands | North Macedonia | Norway | Poland | Portugal | Romania | Russia | Serbia | Slovakia | Slovenia | Spain | Sweden | Switzerland | Turkey | Ukraine | United Kingdom | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| B.01.001.007_20I-501Y-V1_GRY | 8 (14.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 704 (24.0%) | 4 (6.8%) | 4 (0.4%) | 602 (59.8%) | 580 (28.9%) | 1 (20.0%) | 18 (10.1%) | 0 (0.0%) | 5 (2.1%) | 8 (1.1%) | 0 (0.0%) | 0 (0.0%) | 2 (25.0%) | 431 (17.9%) | 12 (15.0%) | 79 (14.7%) | 64 (23.7%) | 179 (28.3%) | 19 (38.8%) | 0 (0.0%) | 1 (2.9%) | 16 (27.1%) | 17 (3.6%) | 508 (27.5%) | 204 (14.0%) | 528 (13.5%) | 112 (23.1%) | 0 (0.0%) | 2913 (29.4%) | 7019 (22.7%) |
| Others | 16 (29.1%) | 2 (40.0%) | 9 (8.3%) | 29 (17.6%) | 575 (19.6%) | 12 (20.3%) | 96 (10.4%) | 150 (14.9%) | 284 (14.1%) | 3 (60.0%) | 72 (40.4%) | 1 (50.0%) | 76 (31.5%) | 75 (10.0%) | 3 (100.0%) | 0 (0.0%) | 0 (0.0%) | 349 (14.5%) | 24 (30.0%) | 268 (49.8%) | 60 (22.2%) | 65 (10.3%) | 17 (34.7%) | 198 (59.3%) | 2 (5.9%) | 7 (11.9%) | 32 (6.9%) | 227 (12.3%) | 252 (17.3%) | 791 (20.3%) | 232 (47.9%) | 7 (63.6%) | 913 (9.2%) | 4847 (15.7%) |
| B.01.160.000_20A-EU2_GH | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 45 (27.3%) | 171 (5.8%) | 37 (62.7%) | 11 (1.2%) | 1 (0.1%) | 121 (6.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 307 (40.9%) | 0 (0.0%) | 1 (100.0%) | 1 (12.5%) | 187 (7.7%) | 0 (0.0%) | 28 (5.2%) | 9 (3.3%) | 51 (8.1%) | 0 (0.0%) | 0 (0.0%) | 1 (2.9%) | 11 (18.6%) | 12 (2.6%) | 24 (1.3%) | 110 (7.6%) | 894 (22.9%) | 1 (0.2%) | 0 (0.0%) | 72 (0.7%) | 2095 (6.8%) |
| B.01.221.000_20A_G | 0 (0.0%) | 2 (40.0%) | 0 (0.0%) | 0 (0.0%) | 165 (5.6%) | 0 (0.0%) | 2 (0.2%) | 0 (0.0%) | 10 (0.5%) | 0 (0.0%) | 1 (0.6%) | 0 (0.0%) | 1 (0.4%) | 155 (20.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 510 (21.1%) | 0 (0.0%) | 11 (2.0%) | 43 (15.9%) | 10 (1.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 4 (0.9%) | 35 (1.9%) | 181 (12.4%) | 141 (3.6%) | 2 (0.4%) | 0 (0.0%) | 3 (0.0%) | 1276 (4.1%) |
| B.01.258.000_20A_G | 6 (10.9%) | 0 (0.0%) | 1 (0.9%) | 0 (0.0%) | 194 (6.6%) | 1 (1.7%) | 36 (3.9%) | 17 (1.7%) | 48 (2.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.8%) | 12 (1.6%) | 0 (0.0%) | 0 (0.0%) | 2 (25.0%) | 53 (2.2%) | 1 (1.2%) | 38 (7.1%) | 40 (14.8%) | 2 (0.3%) | 8 (16.3%) | 0 (0.0%) | 0 (0.0%) | 24 (40.7%) | 34 (7.3%) | 15 (0.8%) | 91 (6.2%) | 122 (3.1%) | 0 (0.0%) | 0 (0.0%) | 87 (0.9%) | 834 (2.7%) |
| B.01.177.007_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 733 (7.4%) | 736 (2.4%) |
| B.01.258.017_20A_G | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 23 (0.8%) | 1 (1.7%) | 0 (0.0%) | 0 (0.0%) | 11 (0.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.1%) | 8 (10.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 342 (73.4%) | 0 (0.0%) | 39 (2.7%) | 80 (2.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 508 (1.6%) |
| B.01.000.000_20A_G | 21 (38.2%) | 0 (0.0%) | 5 (4.6%) | 0 (0.0%) | 44 (1.5%) | 0 (0.0%) | 7 (0.8%) | 2 (0.2%) | 16 (0.8%) | 0 (0.0%) | 0 (0.0%) | 1 (50.0%) | 5 (2.1%) | 2 (0.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 9 (0.4%) | 2 (2.5%) | 1 (0.2%) | 2 (0.7%) | 7 (1.1%) | 2 (4.1%) | 6 (1.8%) | 0 (0.0%) | 1 (1.7%) | 1 (0.2%) | 17 (0.9%) | 4 (0.3%) | 70 (1.8%) | 88 (18.2%) | 0 (0.0%) | 84 (0.8%) | 397 (1.3%) |
| B.01.001.029_20B_GR | 2 (3.6%) | 0 (0.0%) | 0 (0.0%) | 1 (0.6%) | 46 (1.6%) | 0 (0.0%) | 4 (0.4%) | 6 (0.6%) | 15 (0.7%) | 0 (0.0%) | 11 (6.2%) | 0 (0.0%) | 2 (0.8%) | 6 (0.8%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 7 (0.3%) | 0 (0.0%) | 8 (1.5%) | 29 (10.7%) | 27 (4.3%) | 0 (0.0%) | 80 (24.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 21 (1.1%) | 13 (0.9%) | 61 (1.6%) | 22 (4.5%) | 2 (18.2%) | 27 (0.3%) | 390 (1.3%) |
| B.01.177.015_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 352 (3.6%) | 357 (1.2%) |
| B.01.001.070_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 43 (1.5%) | 4 (6.8%) | 3 (0.3%) | 1 (0.1%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 27 (33.8%) | 8 (1.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.3%) | 16 (47.1%) | 0 (0.0%) | 16 (3.4%) | 2 (0.1%) | 4 (0.3%) | 63 (1.6%) | 0 (0.0%) | 0 (0.0%) | 132 (1.3%) | 324 (1.0%) |
| B.01.351.000_20H-501Y-V2_GH | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 86 (52.1%) | 23 (0.8%) | 0 (0.0%) | 0 (0.0%) | 3 (0.3%) | 2 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 24 (1.0%) | 0 (0.0%) | 14 (2.6%) | 2 (0.7%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 24 (1.6%) | 24 (0.6%) | 15 (3.1%) | 0 (0.0%) | 11 (0.1%) | 231 (0.7%) |
| B.01.177.000_20E-EU1_G | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 20 (0.7%) | 0 (0.0%) | 6 (0.7%) | 0 (0.0%) | 12 (0.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 16 (6.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 25 (1.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 39 (2.1%) | 6 (0.4%) | 29 (0.7%) | 0 (0.0%) | 0 (0.0%) | 67 (0.7%) | 221 (0.7%) |
| B.01.001.039_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 16 (0.5%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 3 (0.1%) | 1 (20.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 1 (1.2%) | 2 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 7 (0.5%) | 178 (4.6%) | 0 (0.0%) | 1 (9.1%) | 0 (0.0%) | 214 (0.7%) |
| B.01.001.037_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 8 (0.9%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (2.8%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 1 (0.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 6 (0.2%) | 2 (0.4%) | 0 (0.0%) | 185 (1.9%) | 212 (0.7%) |
| B.01.001.315_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 3 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.5%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 203 (2.1%) | 211 (0.7%) |
| B.01.177.008_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 12 (1.3%) | 1 (0.1%) | 9 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (1.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 175 (1.8%) | 201 (0.7%) |
| B.01.001.001_20D_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 17 (0.6%) | 0 (0.0%) | 1 (0.1%) | 2 (0.2%) | 89 (4.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 8 (1.1%) | 0 (0.0%) | 0 (0.0%) | 3 (37.5%) | 2 (0.1%) | 1 (1.2%) | 0 (0.0%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 13 (38.2%) | 0 (0.0%) | 0 (0.0%) | 3 (0.2%) | 15 (1.0%) | 25 (0.6%) | 1 (0.2%) | 0 (0.0%) | 19 (0.2%) | 200 (0.6%) |
| B.01.001.317_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 66 (2.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (2.8%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 1 (1.2%) | 6 (1.1%) | 2 (0.7%) | 0 (0.0%) | 1 (2.0%) | 48 (14.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 1 (0.1%) | 4 (0.1%) | 5 (1.0%) | 1 (9.1%) | 2 (0.0%) | 145 (0.5%) |
| B.01.177.005_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 144 (1.5%) | 145 (0.5%) |
| B.01.001.311_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 115 (1.2%) | 115 (0.4%) |
| B.01.177.011_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 98 (1.0%) | 99 (0.3%) |
| B.01.001.298_20B_GR | 0 (0.0%) | 0 (0.0%) | 93 (86.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 93 (0.3%) |
| B.01.001.232_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 10 (0.3%) | 0 (0.0%) | 56 (6.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 9 (0.4%) | 0 (0.0%) | 1 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 4 (0.1%) | 1 (0.2%) | 0 (0.0%) | 8 (0.1%) | 91 (0.3%) |
| B.01.177.000_20E-EU1_GV | 2 (3.6%) | 1 (20.0%) | 0 (0.0%) | 4 (2.4%) | 814 (27.8%) | 0 (0.0%) | 672 (73.0%) | 221 (22.0%) | 803 (40.0%) | 0 (0.0%) | 65 (36.5%) | 0 (0.0%) | 134 (55.6%) | 174 (23.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 792 (32.8%) | 3 (3.8%) | 74 (13.8%) | 15 (5.6%) | 283 (44.8%) | 2 (4.1%) | 0 (0.0%) | 1 (2.9%) | 0 (0.0%) | 7 (1.5%) | 947 (51.3%) | 505 (34.7%) | 883 (22.6%) | 3 (0.6%) | 0 (0.0%) | 3554 (35.9%) | 9959 (32.2%) |
| Total | 55 (100.0%) | 5 (100.0%) | 108 (100.0%) | 165 (100.0%) | 2933 (100.0%) | 59 (100.0%) | 920 (100.0%) | 1006 (100.0%) | 2008 (100.0%) | 5 (100.0%) | 178 (100.0%) | 2 (100.0%) | 241 (100.0%) | 751 (100.0%) | 3 (100.0%) | 1 (100.0%) | 8 (100.0%) | 2413 (100.0%) | 80 (100.0%) | 538 (100.0%) | 270 (100.0%) | 632 (100.0%) | 49 (100.0%) | 334 (100.0%) | 34 (100.0%) | 59 (100.0%) | 466 (100.0%) | 1845 (100.0%) | 1456 (100.0%) | 3904 (100.0%) | 484 (100.0%) | 11 (100.0%) | 9897 (100.0%) | 30920 (100.0%) |
Table 4.2.b. SARS-Cov2 genomes by PANGO lineages and TP/month
| PANGO_lineage | TP1 | TP2 | 2020-07 | 2020-08 | 2020-09 | 2020-10 | 2020-11 | 2020-12 | 2021-01 | 2021-02 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| B.01.001.007_20I-501Y-V1_GRY | 4 (0.0%) | 7019 (22.7%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 14 (0.5%) | 398 (8.7%) | 2329 (29.3%) | 4278 (49.0%) | 7019 (22.7%) |
| Others | 1904 (23.0%) | 4847 (15.7%) | 218 (53.2%) | 510 (50.6%) | 411 (21.5%) | 524 (15.5%) | 429 (14.6%) | 598 (13.0%) | 990 (12.5%) | 1167 (13.4%) | 4847 (15.7%) |
| B.01.160.000_20A-EU2_GH | 489 (5.9%) | 2095 (6.8%) | 0 (0.0%) | 24 (2.4%) | 63 (3.3%) | 234 (6.9%) | 332 (11.3%) | 424 (9.2%) | 678 (8.5%) | 340 (3.9%) | 2095 (6.8%) |
| B.01.221.000_20A_G | 247 (3.0%) | 1276 (4.1%) | 0 (0.0%) | 7 (0.7%) | 58 (3.0%) | 108 (3.2%) | 178 (6.1%) | 248 (5.4%) | 358 (4.5%) | 319 (3.7%) | 1276 (4.1%) |
| B.01.258.000_20A_G | 215 (2.6%) | 834 (2.7%) | 1 (0.2%) | 29 (2.9%) | 22 (1.1%) | 100 (3.0%) | 89 (3.0%) | 192 (4.2%) | 213 (2.7%) | 188 (2.2%) | 834 (2.7%) |
| B.01.177.007_20E-EU1_GV | 254 (3.1%) | 736 (2.4%) | 0 (0.0%) | 0 (0.0%) | 43 (2.2%) | 116 (3.4%) | 191 (6.5%) | 263 (5.7%) | 78 (1.0%) | 45 (0.5%) | 736 (2.4%) |
| B.01.001.029_20B_GR | 168 (2.0%) | 390 (1.3%) | 53 (12.9%) | 33 (3.3%) | 37 (1.9%) | 31 (0.9%) | 21 (0.7%) | 44 (1.0%) | 68 (0.9%) | 103 (1.2%) | 390 (1.3%) |
| B.01.000.000_20A_G | 149 (1.8%) | 397 (1.3%) | 9 (2.2%) | 16 (1.6%) | 63 (3.3%) | 43 (1.3%) | 26 (0.9%) | 43 (0.9%) | 64 (0.8%) | 133 (1.5%) | 397 (1.3%) |
| B.01.258.017_20A_G | 6 (0.1%) | 508 (1.6%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 5 (0.1%) | 1 (0.0%) | 21 (0.5%) | 187 (2.4%) | 294 (3.4%) | 508 (1.6%) |
| B.01.001.070_20B_GR | 164 (2.0%) | 324 (1.0%) | 38 (9.3%) | 21 (2.1%) | 9 (0.5%) | 49 (1.4%) | 74 (2.5%) | 33 (0.7%) | 62 (0.8%) | 38 (0.4%) | 324 (1.0%) |
| B.01.177.015_20E-EU1_GV | 87 (1.0%) | 357 (1.2%) | 0 (0.0%) | 0 (0.0%) | 20 (1.0%) | 37 (1.1%) | 73 (2.5%) | 131 (2.8%) | 60 (0.8%) | 36 (0.4%) | 357 (1.2%) |
| B.01.001.315_20B_GR | 188 (2.3%) | 211 (0.7%) | 0 (0.0%) | 101 (10.0%) | 47 (2.5%) | 27 (0.8%) | 23 (0.8%) | 8 (0.2%) | 4 (0.1%) | 1 (0.0%) | 211 (0.7%) |
| B.01.001.037_20B_GR | 173 (2.1%) | 212 (0.7%) | 0 (0.0%) | 13 (1.3%) | 45 (2.4%) | 93 (2.8%) | 42 (1.4%) | 14 (0.3%) | 3 (0.0%) | 2 (0.0%) | 212 (0.7%) |
| B.01.177.008_20E-EU1_GV | 113 (1.4%) | 201 (0.7%) | 0 (0.0%) | 0 (0.0%) | 24 (1.3%) | 65 (1.9%) | 41 (1.4%) | 40 (0.9%) | 16 (0.2%) | 15 (0.2%) | 201 (0.7%) |
| B.01.177.000_20E-EU1_G | 79 (1.0%) | 221 (0.7%) | 1 (0.2%) | 4 (0.4%) | 8 (0.4%) | 31 (0.9%) | 48 (1.6%) | 29 (0.6%) | 59 (0.7%) | 41 (0.5%) | 221 (0.7%) |
| B.01.001.039_20B_GR | 85 (1.0%) | 214 (0.7%) | 17 (4.1%) | 16 (1.6%) | 2 (0.1%) | 30 (0.9%) | 40 (1.4%) | 24 (0.5%) | 64 (0.8%) | 21 (0.2%) | 214 (0.7%) |
| B.01.001.001_20D_GR | 87 (1.0%) | 200 (0.6%) | 23 (5.6%) | 9 (0.9%) | 24 (1.3%) | 26 (0.8%) | 16 (0.5%) | 15 (0.3%) | 72 (0.9%) | 15 (0.2%) | 200 (0.6%) |
| B.01.177.005_20E-EU1_GV | 86 (1.0%) | 145 (0.5%) | 0 (0.0%) | 1 (0.1%) | 16 (0.8%) | 54 (1.6%) | 19 (0.6%) | 26 (0.6%) | 25 (0.3%) | 4 (0.0%) | 145 (0.5%) |
| B.01.351.000_20H-501Y-V2_GH | 0 (0.0%) | 231 (0.7%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 12 (0.3%) | 134 (1.7%) | 85 (1.0%) | 231 (0.7%) |
| B.01.001.311_20B_GR | 105 (1.3%) | 115 (0.4%) | 0 (0.0%) | 4 (0.4%) | 13 (0.7%) | 76 (2.2%) | 16 (0.5%) | 6 (0.1%) | 0 (0.0%) | 0 (0.0%) | 115 (0.4%) |
| B.01.177.011_20E-EU1_GV | 93 (1.1%) | 99 (0.3%) | 0 (0.0%) | 0 (0.0%) | 68 (3.6%) | 22 (0.7%) | 6 (0.2%) | 3 (0.1%) | 0 (0.0%) | 0 (0.0%) | 99 (0.3%) |
| B.01.001.317_20B_GR | 40 (0.5%) | 145 (0.5%) | 7 (1.7%) | 5 (0.5%) | 10 (0.5%) | 12 (0.4%) | 14 (0.5%) | 15 (0.3%) | 37 (0.5%) | 45 (0.5%) | 145 (0.5%) |
| B.01.001.298_20B_GR | 88 (1.1%) | 93 (0.3%) | 0 (0.0%) | 2 (0.2%) | 15 (0.8%) | 37 (1.1%) | 39 (1.3%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 93 (0.3%) |
| B.01.001.232_20B_GR | 81 (1.0%) | 91 (0.3%) | 14 (3.4%) | 31 (3.1%) | 25 (1.3%) | 7 (0.2%) | 5 (0.2%) | 6 (0.1%) | 1 (0.0%) | 2 (0.0%) | 91 (0.3%) |
| B.01.177.000_20E-EU1_GV | 3388 (40.9%) | 9959 (32.2%) | 29 (7.1%) | 181 (18.0%) | 891 (46.6%) | 1654 (48.9%) | 1194 (40.7%) | 2008 (43.6%) | 2445 (30.8%) | 1557 (17.8%) | 9959 (32.2%) |
| Total | 8293 (100.0%) | 30920 (100.0%) | 410 (100.0%) | 1007 (100.0%) | 1914 (100.0%) | 3381 (100.0%) | 2931 (100.0%) | 4601 (100.0%) | 7947 (100.0%) | 8729 (100.0%) | 30920 (100.0%) |
Table 4.2.c. SARS-Cov2 genomes by PANGO lineages and week
| PANGO_lineage/Week | 2020-27 | 2020-28 | 2020-29 | 2020-30 | 2020-31 | 2020-32 | 2020-33 | 2020-34 | 2020-35 | 2020-36 | 2020-37 | 2020-38 | 2020-39 | 2020-40 | 2020-41 | 2020-42 | 2020-43 | 2020-44 | 2020-45 | 2020-46 | 2020-47 | 2020-48 | 2020-49 | 2020-50 | 2020-51 | 2020-52 | 2020-53 | 2021-01 | 2021-02 | 2021-03 | 2021-04 | 2021-05 | 2021-06 | 2021-07 | 2021-08 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| B.01.177.000_20E-EU1_GV | 2 (3.6%) | 5 (5.0%) | 10 (11.6%) | 2 (2.3%) | 16 (13.3%) | 20 (10.7%) | 33 (14.5%) | 52 (18.7%) | 60 (25.6%) | 89 (31.6%) | 181 (51.0%) | 258 (52.5%) | 277 (44.6%) | 267 (46.0%) | 397 (53.4%) | 342 (50.4%) | 372 (46.9%) | 430 (45.4%) | 274 (35.8%) | 333 (45.2%) | 224 (41.3%) | 259 (42.7%) | 330 (44.5%) | 447 (48.7%) | 581 (46.4%) | 425 (40.1%) | 704 (40.2%) | 469 (34.6%) | 572 (33.5%) | 453 (27.1%) | 518 (23.4%) | 562 (22.4%) | 465 (18.4%) | 322 (15.6%) | 208 (12.8%) | 9959 (32.2%) |
| B.01.001.007_20I-501Y-V1_GRY | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 4 (0.5%) | 4 (0.7%) | 4 (0.7%) | 6 (0.8%) | 22 (2.4%) | 87 (6.9%) | 136 (12.8%) | 247 (14.1%) | 364 (26.9%) | 494 (28.9%) | 531 (31.8%) | 842 (38.0%) | 892 (35.5%) | 1211 (47.9%) | 1183 (57.2%) | 992 (61.1%) | 7019 (22.7%) |
| Others | 38 (67.9%) | 54 (53.5%) | 39 (45.3%) | 46 (53.5%) | 67 (55.8%) | 92 (49.2%) | 121 (53.3%) | 157 (56.5%) | 91 (38.9%) | 112 (39.7%) | 96 (27.0%) | 79 (16.1%) | 104 (16.7%) | 98 (16.9%) | 114 (15.3%) | 136 (20.1%) | 101 (12.7%) | 153 (16.2%) | 120 (15.7%) | 94 (12.8%) | 83 (15.3%) | 79 (13.0%) | 115 (15.5%) | 106 (11.6%) | 164 (13.1%) | 136 (12.8%) | 209 (11.9%) | 156 (11.5%) | 181 (10.6%) | 262 (15.7%) | 277 (12.5%) | 291 (11.6%) | 367 (14.5%) | 294 (14.2%) | 215 (13.2%) | 4847 (15.7%) |
| B.01.160.000_20A-EU2_GH | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (1.1%) | 1 (0.4%) | 8 (2.9%) | 10 (4.3%) | 16 (5.7%) | 14 (3.9%) | 8 (1.6%) | 17 (2.7%) | 37 (6.4%) | 33 (4.4%) | 30 (4.4%) | 57 (7.2%) | 97 (10.2%) | 90 (11.7%) | 86 (11.7%) | 59 (10.9%) | 70 (11.5%) | 83 (11.2%) | 92 (10.0%) | 100 (8.0%) | 92 (8.7%) | 156 (8.9%) | 144 (10.6%) | 179 (10.5%) | 131 (7.8%) | 143 (6.4%) | 124 (4.9%) | 105 (4.2%) | 60 (2.9%) | 51 (3.1%) | 2095 (6.8%) |
| B.01.221.000_20A_G | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.8%) | 1 (0.5%) | 1 (0.4%) | 2 (0.7%) | 2 (0.9%) | 10 (3.5%) | 2 (0.6%) | 26 (5.3%) | 17 (2.7%) | 13 (2.2%) | 10 (1.3%) | 15 (2.2%) | 47 (5.9%) | 29 (3.1%) | 35 (4.6%) | 43 (5.8%) | 31 (5.7%) | 56 (9.2%) | 41 (5.5%) | 52 (5.7%) | 67 (5.3%) | 56 (5.3%) | 62 (3.5%) | 54 (4.0%) | 74 (4.3%) | 90 (5.4%) | 120 (5.4%) | 149 (5.9%) | 104 (4.1%) | 37 (1.8%) | 29 (1.8%) | 1276 (4.1%) |
| B.01.258.000_20A_G | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (1.2%) | 1 (0.8%) | 2 (1.1%) | 4 (1.8%) | 11 (4.0%) | 10 (4.3%) | 6 (2.1%) | 9 (2.5%) | 3 (0.6%) | 4 (0.6%) | 11 (1.9%) | 9 (1.2%) | 22 (3.2%) | 35 (4.4%) | 32 (3.4%) | 35 (4.6%) | 20 (2.7%) | 12 (2.2%) | 10 (1.6%) | 20 (2.7%) | 28 (3.1%) | 37 (3.0%) | 70 (6.6%) | 65 (3.7%) | 28 (2.1%) | 52 (3.0%) | 44 (2.6%) | 65 (2.9%) | 81 (3.2%) | 35 (1.4%) | 36 (1.7%) | 36 (2.2%) | 834 (2.7%) |
| B.01.177.007_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 1 (0.3%) | 9 (1.8%) | 22 (3.5%) | 15 (2.6%) | 33 (4.4%) | 12 (1.8%) | 35 (4.4%) | 46 (4.9%) | 42 (5.5%) | 40 (5.4%) | 40 (7.4%) | 43 (7.1%) | 34 (4.6%) | 69 (7.5%) | 99 (7.9%) | 42 (4.0%) | 35 (2.0%) | 20 (1.5%) | 21 (1.2%) | 18 (1.1%) | 14 (0.6%) | 20 (0.8%) | 20 (0.8%) | 4 (0.2%) | 1 (0.1%) | 736 (2.4%) |
| B.01.258.017_20A_G | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.3%) | 2 (0.3%) | 2 (0.2%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.3%) | 4 (0.4%) | 7 (0.6%) | 3 (0.3%) | 128 (7.3%) | 16 (1.2%) | 18 (1.1%) | 13 (0.8%) | 17 (0.8%) | 238 (9.5%) | 37 (1.5%) | 14 (0.7%) | 5 (0.3%) | 508 (1.6%) |
| B.01.000.000_20A_G | 3 (5.4%) | 3 (3.0%) | 1 (1.2%) | 1 (1.2%) | 1 (0.8%) | 5 (2.7%) | 2 (0.9%) | 4 (1.4%) | 5 (2.1%) | 4 (1.4%) | 4 (1.1%) | 13 (2.6%) | 37 (6.0%) | 25 (4.3%) | 8 (1.1%) | 4 (0.6%) | 5 (0.6%) | 8 (0.8%) | 12 (1.6%) | 5 (0.7%) | 5 (0.9%) | 2 (0.3%) | 10 (1.3%) | 5 (0.5%) | 7 (0.6%) | 16 (1.5%) | 14 (0.8%) | 8 (0.6%) | 24 (1.4%) | 14 (0.8%) | 9 (0.4%) | 18 (0.7%) | 56 (2.2%) | 29 (1.4%) | 30 (1.8%) | 397 (1.3%) |
| B.01.001.029_20B_GR | 5 (8.9%) | 15 (14.9%) | 15 (17.4%) | 14 (16.3%) | 5 (4.2%) | 11 (5.9%) | 4 (1.8%) | 5 (1.8%) | 11 (4.7%) | 7 (2.5%) | 9 (2.5%) | 5 (1.0%) | 10 (1.6%) | 12 (2.1%) | 7 (0.9%) | 8 (1.2%) | 7 (0.9%) | 5 (0.5%) | 5 (0.7%) | 8 (1.1%) | 3 (0.6%) | 3 (0.5%) | 11 (1.5%) | 9 (1.0%) | 8 (0.6%) | 11 (1.0%) | 8 (0.5%) | 13 (1.0%) | 10 (0.6%) | 19 (1.1%) | 24 (1.1%) | 19 (0.8%) | 36 (1.4%) | 25 (1.2%) | 23 (1.4%) | 390 (1.3%) |
| B.01.177.015_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 2 (0.6%) | 5 (1.0%) | 9 (1.4%) | 3 (0.5%) | 5 (0.7%) | 2 (0.3%) | 15 (1.9%) | 20 (2.1%) | 12 (1.6%) | 14 (1.9%) | 20 (3.7%) | 19 (3.1%) | 29 (3.9%) | 32 (3.5%) | 40 (3.2%) | 23 (2.2%) | 15 (0.9%) | 13 (1.0%) | 15 (0.9%) | 10 (0.6%) | 17 (0.8%) | 11 (0.4%) | 12 (0.5%) | 9 (0.4%) | 4 (0.2%) | 357 (1.2%) |
| B.01.001.070_20B_GR | 2 (3.6%) | 12 (11.9%) | 8 (9.3%) | 12 (14.0%) | 6 (5.0%) | 3 (1.6%) | 5 (2.2%) | 10 (3.6%) | 1 (0.4%) | 4 (1.4%) | 1 (0.3%) | 1 (0.2%) | 2 (0.3%) | 3 (0.5%) | 8 (1.1%) | 11 (1.6%) | 11 (1.4%) | 20 (2.1%) | 30 (3.9%) | 16 (2.2%) | 12 (2.2%) | 9 (1.5%) | 12 (1.6%) | 7 (0.8%) | 4 (0.3%) | 8 (0.8%) | 17 (1.0%) | 13 (1.0%) | 8 (0.5%) | 17 (1.0%) | 13 (0.6%) | 23 (0.9%) | 7 (0.3%) | 6 (0.3%) | 2 (0.1%) | 324 (1.0%) |
| B.01.351.000_20H-501Y-V2_GH | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (0.2%) | 5 (0.5%) | 8 (0.5%) | 4 (0.3%) | 23 (1.3%) | 23 (1.4%) | 80 (3.6%) | 30 (1.2%) | 31 (1.2%) | 14 (0.7%) | 10 (0.6%) | 231 (0.7%) |
| B.01.177.000_20E-EU1_G | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.8%) | 0 (0.0%) | 0 (0.0%) | 2 (0.7%) | 1 (0.4%) | 2 (0.7%) | 2 (0.6%) | 3 (0.6%) | 0 (0.0%) | 8 (1.4%) | 6 (0.8%) | 7 (1.0%) | 4 (0.5%) | 8 (0.8%) | 28 (3.7%) | 7 (1.0%) | 6 (1.1%) | 6 (1.0%) | 6 (0.8%) | 5 (0.5%) | 9 (0.7%) | 5 (0.5%) | 10 (0.6%) | 15 (1.1%) | 9 (0.5%) | 19 (1.1%) | 11 (0.5%) | 17 (0.7%) | 6 (0.2%) | 11 (0.5%) | 7 (0.4%) | 221 (0.7%) |
| B.01.001.039_20B_GR | 0 (0.0%) | 2 (2.0%) | 6 (7.0%) | 1 (1.2%) | 8 (6.7%) | 8 (4.3%) | 4 (1.8%) | 3 (1.1%) | 1 (0.4%) | 0 (0.0%) | 1 (0.3%) | 1 (0.2%) | 0 (0.0%) | 2 (0.3%) | 10 (1.3%) | 9 (1.3%) | 6 (0.8%) | 3 (0.3%) | 13 (1.7%) | 9 (1.2%) | 7 (1.3%) | 9 (1.5%) | 7 (0.9%) | 3 (0.3%) | 8 (0.6%) | 7 (0.7%) | 7 (0.4%) | 18 (1.3%) | 9 (0.5%) | 11 (0.7%) | 20 (0.9%) | 12 (0.5%) | 3 (0.1%) | 4 (0.2%) | 2 (0.1%) | 214 (0.7%) |
| B.01.001.037_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 11 (4.7%) | 4 (1.4%) | 6 (1.7%) | 19 (3.9%) | 15 (2.4%) | 5 (0.9%) | 35 (4.7%) | 19 (2.8%) | 29 (3.7%) | 9 (1.0%) | 8 (1.0%) | 13 (1.8%) | 3 (0.6%) | 14 (2.3%) | 6 (0.8%) | 3 (0.3%) | 4 (0.3%) | 3 (0.3%) | 0 (0.0%) | 0 (0.0%) | 2 (0.1%) | 0 (0.0%) | 1 (0.0%) | 1 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 212 (0.7%) |
| B.01.001.315_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.8%) | 34 (18.2%) | 37 (16.3%) | 12 (4.3%) | 16 (6.8%) | 9 (3.2%) | 10 (2.8%) | 13 (2.6%) | 14 (2.3%) | 4 (0.7%) | 5 (0.7%) | 8 (1.2%) | 10 (1.3%) | 6 (0.6%) | 4 (0.5%) | 5 (0.7%) | 6 (1.1%) | 4 (0.7%) | 2 (0.3%) | 2 (0.2%) | 3 (0.2%) | 1 (0.1%) | 0 (0.0%) | 2 (0.1%) | 1 (0.1%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 211 (0.7%) |
| B.01.177.008_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 2 (0.6%) | 3 (0.6%) | 16 (2.6%) | 10 (1.7%) | 14 (1.9%) | 11 (1.6%) | 10 (1.3%) | 23 (2.4%) | 13 (1.7%) | 10 (1.4%) | 8 (1.5%) | 8 (1.3%) | 7 (0.9%) | 11 (1.2%) | 11 (0.9%) | 9 (0.8%) | 3 (0.2%) | 2 (0.1%) | 6 (0.4%) | 2 (0.1%) | 6 (0.3%) | 2 (0.1%) | 8 (0.3%) | 4 (0.2%) | 1 (0.1%) | 201 (0.7%) |
| B.01.001.001_20D_GR | 5 (8.9%) | 8 (7.9%) | 6 (7.0%) | 3 (3.5%) | 1 (0.8%) | 1 (0.5%) | 0 (0.0%) | 2 (0.7%) | 6 (2.6%) | 5 (1.8%) | 5 (1.4%) | 8 (1.6%) | 4 (0.6%) | 4 (0.7%) | 3 (0.4%) | 6 (0.9%) | 3 (0.4%) | 14 (1.5%) | 2 (0.3%) | 1 (0.1%) | 4 (0.7%) | 7 (1.2%) | 1 (0.1%) | 8 (0.9%) | 2 (0.2%) | 0 (0.0%) | 55 (3.1%) | 2 (0.1%) | 6 (0.4%) | 4 (0.2%) | 9 (0.4%) | 6 (0.2%) | 6 (0.2%) | 2 (0.1%) | 1 (0.1%) | 200 (0.6%) |
| B.01.001.317_20B_GR | 0 (0.0%) | 2 (2.0%) | 1 (1.2%) | 0 (0.0%) | 4 (3.3%) | 1 (0.5%) | 1 (0.4%) | 2 (0.7%) | 1 (0.4%) | 0 (0.0%) | 2 (0.6%) | 2 (0.4%) | 3 (0.5%) | 5 (0.9%) | 4 (0.5%) | 4 (0.6%) | 1 (0.1%) | 2 (0.2%) | 2 (0.3%) | 3 (0.4%) | 4 (0.7%) | 3 (0.5%) | 2 (0.3%) | 0 (0.0%) | 7 (0.6%) | 5 (0.5%) | 5 (0.3%) | 3 (0.2%) | 2 (0.1%) | 6 (0.4%) | 23 (1.0%) | 16 (0.6%) | 14 (0.6%) | 12 (0.6%) | 3 (0.2%) | 145 (0.5%) |
| B.01.177.005_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 4 (1.4%) | 1 (0.3%) | 5 (1.0%) | 6 (1.0%) | 15 (2.6%) | 13 (1.7%) | 7 (1.0%) | 8 (1.0%) | 15 (1.6%) | 9 (1.2%) | 3 (0.4%) | 2 (0.4%) | 1 (0.2%) | 11 (1.5%) | 9 (1.0%) | 1 (0.1%) | 5 (0.5%) | 1 (0.1%) | 11 (0.8%) | 3 (0.2%) | 3 (0.2%) | 8 (0.4%) | 0 (0.0%) | 1 (0.0%) | 1 (0.0%) | 2 (0.1%) | 145 (0.5%) |
| B.01.001.311_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 3 (1.3%) | 0 (0.0%) | 1 (0.4%) | 1 (0.4%) | 1 (0.3%) | 0 (0.0%) | 6 (1.0%) | 17 (2.9%) | 23 (3.1%) | 10 (1.5%) | 14 (1.8%) | 17 (1.8%) | 7 (0.9%) | 5 (0.7%) | 2 (0.4%) | 1 (0.2%) | 3 (0.4%) | 0 (0.0%) | 3 (0.2%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 115 (0.4%) |
| B.01.177.011_20E-EU1_GV | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 2 (0.6%) | 16 (3.3%) | 43 (6.9%) | 21 (3.6%) | 4 (0.5%) | 1 (0.1%) | 2 (0.3%) | 1 (0.1%) | 0 (0.0%) | 3 (0.4%) | 3 (0.6%) | 0 (0.0%) | 0 (0.0%) | 2 (0.2%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 99 (0.3%) |
| B.01.001.298_20B_GR | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.4%) | 0 (0.0%) | 1 (0.4%) | 1 (0.4%) | 1 (0.3%) | 5 (1.0%) | 7 (1.1%) | 4 (0.7%) | 1 (0.1%) | 9 (1.3%) | 19 (2.4%) | 5 (0.5%) | 23 (3.0%) | 12 (1.6%) | 4 (0.7%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 93 (0.3%) |
| B.01.001.232_20B_GR | 1 (1.8%) | 0 (0.0%) | 0 (0.0%) | 6 (7.0%) | 8 (6.7%) | 7 (3.7%) | 10 (4.4%) | 7 (2.5%) | 6 (2.6%) | 5 (1.8%) | 3 (0.8%) | 9 (1.8%) | 8 (1.3%) | 1 (0.2%) | 1 (0.1%) | 3 (0.4%) | 0 (0.0%) | 2 (0.2%) | 2 (0.3%) | 2 (0.3%) | 0 (0.0%) | 0 (0.0%) | 4 (0.5%) | 1 (0.1%) | 1 (0.1%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 1 (0.1%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.1%) | 91 (0.3%) |
| Total | 56 (100.0%) | 101 (100.0%) | 86 (100.0%) | 86 (100.0%) | 120 (100.0%) | 187 (100.0%) | 227 (100.0%) | 278 (100.0%) | 234 (100.0%) | 282 (100.0%) | 355 (100.0%) | 491 (100.0%) | 621 (100.0%) | 580 (100.0%) | 743 (100.0%) | 678 (100.0%) | 793 (100.0%) | 947 (100.0%) | 766 (100.0%) | 736 (100.0%) | 542 (100.0%) | 607 (100.0%) | 742 (100.0%) | 917 (100.0%) | 1253 (100.0%) | 1060 (100.0%) | 1750 (100.0%) | 1355 (100.0%) | 1710 (100.0%) | 1670 (100.0%) | 2218 (100.0%) | 2513 (100.0%) | 2526 (100.0%) | 2067 (100.0%) | 1623 (100.0%) | 30920 (100.0%) |
Table 4.2.d. Change vector directionality
| Characteristic | E, N = 60 | ENE, N = 1 | ESE, N = 3 | N, N = 1 | NE, N = 1 | NNE, N = 1 | NNW, N = 1 | NW, N = 1 | S, N = 62 | SE, N = 12 | SSE, N = 17 | SSW, N = 50 | SW, N = 82 | W, N = 2 | WNW, N = 1 | WSW, N = 43 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Timepoint | ||||||||||||||||
| TP2 | 60 / 60 (100%) | 1 / 1 (100%) | 3 / 3 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 62 / 62 (100%) | 12 / 12 (100%) | 17 / 17 (100%) | 50 / 50 (100%) | 82 / 82 (100%) | 2 / 2 (100%) | 1 / 1 (100%) | 43 / 43 (100%) |
| Temp_ECC | 0.76 (0.19) | 0.46 (NA) | 0.37 (0.03) | 0.63 (NA) | 0.55 (NA) | 0.62 (NA) | 0.55 (NA) | 0.00 (NA) | 0.63 (0.21) | 0.49 (0.16) | 0.45 (0.10) | 0.51 (0.10) | 0.54 (0.17) | 0.94 (0.05) | 0.00 (NA) | 0.70 (0.14) |
| Geo_ECC | 0.74 (0.26) | 0.40 (NA) | 0.40 (0.08) | 0.55 (NA) | 0.59 (NA) | 0.76 (NA) | 0.41 (NA) | 0.00 (NA) | 0.74 (0.28) | 0.50 (0.07) | 0.54 (0.15) | 0.61 (0.19) | 0.54 (0.16) | 0.38 (0.12) | 0.00 (NA) | 0.46 (0.13) |
| Delta_Temp_ECC | 0.00 (0.00) | 0.03 (NA) | -0.02 (0.01) | 0.17 (NA) | 0.04 (NA) | 0.06 (NA) | 0.08 (NA) | 0.00 (NA) | -0.16 (0.11) | -0.11 (0.06) | -0.22 (0.09) | -0.22 (0.14) | -0.35 (0.21) | -0.06 (0.05) | 0.00 (NA) | -0.24 (0.11) |
| Delta_Geo_ECC | 0.01 (0.02) | 0.08 (NA) | 0.05 (0.03) | -0.02 (NA) | 0.04 (NA) | 0.02 (NA) | -0.03 (NA) | 0.00 (NA) | 0.00 (0.02) | 0.12 (0.07) | 0.10 (0.06) | -0.10 (0.08) | -0.36 (0.21) | -0.62 (0.12) | 0.00 (NA) | -0.50 (0.17) |
| Cluster_Size_TP2 | 7.43 (11.15) | 16.00 (NA) | 6.67 (4.62) | 69.00 (NA) | 23.00 (NA) | 37.00 (NA) | 70.00 (NA) | 0.00 (NA) | 222.74 (1,265.81) | 37.58 (54.67) | 23.53 (37.47) | 238.46 (1,023.75) | 33.51 (150.20) | 2.00 (0.00) | 0.00 (NA) | 15.60 (37.44) |
| Vector_Angle | 90.03 (1.87) | 69.44 (NA) | 108.09 (3.89) | 353.29 (NA) | 45.00 (NA) | 18.43 (NA) | 339.44 (NA) | 0.00 (NA) | 180.19 (5.00) | 135.09 (5.22) | 156.98 (7.68) | 201.71 (7.56) | 225.28 (6.70) | 264.40 (3.42) | 0.00 (NA) | 244.25 (6.20) |
| Cluster_Size_TP1 | ||||||||||||||||
| 1< TP1_size < 11 | 45 / 60 (75%) | 1 / 1 (100%) | 3 / 3 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 1 / 1 (100%) | 0 / 1 (0%) | 14 / 62 (23%) | 11 / 12 (92%) | 16 / 17 (94%) | 21 / 50 (42%) | 19 / 82 (23%) | 0 / 2 (0%) | 0 / 1 (0%) | 6 / 43 (14%) |
| 10< TP1_size < 101 | 8 / 60 (13%) | 0 / 1 (0%) | 0 / 3 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 20 / 62 (32%) | 1 / 12 (8.3%) | 1 / 17 (5.9%) | 18 / 50 (36%) | 8 / 82 (9.8%) | 0 / 2 (0%) | 0 / 1 (0%) | 0 / 43 (0%) |
| NA | 0 / 60 (0%) | 0 / 1 (0%) | 0 / 3 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 1 / 1 (100%) | 0 / 62 (0%) | 0 / 12 (0%) | 0 / 17 (0%) | 0 / 50 (0%) | 0 / 82 (0%) | 0 / 2 (0%) | 1 / 1 (100%) | 0 / 43 (0%) |
| TP1_size = 0 | 7 / 60 (12%) | 0 / 1 (0%) | 0 / 3 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 23 / 62 (37%) | 0 / 12 (0%) | 0 / 17 (0%) | 2 / 50 (4.0%) | 27 / 82 (33%) | 2 / 2 (100%) | 0 / 1 (0%) | 34 / 43 (79%) |
| TP1_size = 1 | 0 / 60 (0%) | 0 / 1 (0%) | 0 / 3 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 62 (0%) | 0 / 12 (0%) | 0 / 17 (0%) | 3 / 50 (6.0%) | 27 / 82 (33%) | 0 / 2 (0%) | 0 / 1 (0%) | 3 / 43 (7.0%) |
| TP1_size > 100 | 0 / 60 (0%) | 0 / 1 (0%) | 0 / 3 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 0 / 1 (0%) | 5 / 62 (8.1%) | 0 / 12 (0%) | 0 / 17 (0%) | 6 / 50 (12%) | 1 / 82 (1.2%) | 0 / 2 (0%) | 0 / 1 (0%) | 0 / 43 (0%) |
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5. Supplementary figures
5.1.Genome counts over time ECC
a.By Country
Figure 5.1.A.I. TP1 vs TP2 genome counts
Figure 5.1.A.II. Cumulative genome counts by month, faceted by country
Figure 5.1.A.III. Genome counts, faceted by month
Figure 5.1.A.IV. Cumulative genome counts by week, faceted by country
b.By Provice
Figure 5.1.B.I. TP1 vs TP2 genome counts
Figure 5.1.B.II. Cumulative genome counts by month, faceted by country
Figure 5.1.B.III. Genome counts, faceted by month
Figure 5.1.B.IV. Cumulative genome counts by week, faceted by country
5.2. Lineage prevalence over tim
a.By Month
Figure 5.2.A.I. Cumulative genome counts for most prevalent lineages, by country
b.By Week
Figure 5.2.B.I. Cumulative genome counts for most prevalent lineages, by country
5.3.Lineage spread by geographical area
a.By Country
Figure 5.3.A.I. TP1 vs TP2 of countries detected
Figure 5.3.A.II. Countries detected: most prevalent lineages, by month
Figure 5.3.A.III. Countries detected: most prevalent lineages, by week
b.By province
Figure 5.3.B.I. TP1 vs TP2 of Provinces detected
Figure 5.3.B.II. Provinces detected: most prevalent lineages, by month
Figure 5.3.B.III. Provinces detected: most prevalent lineages, by week
Figure 5.4. ECC direction classes vs compass rose
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